VISDB Viral Integration Site DataBase

VIS ID

TVIS30015937

Fusion event

HIV-NCOA3 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q13.12

Reference genome

Start

End

46206917/47577992 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-21-5p ; hsa-mir-19b-3p ; hsa-mir-18a-5p ; hsa-mir-29b-3p ; hsa-mir-17-5p ; hsa-mir-33a-5p ; hsa-mir-590-3p ; hsa-mir-335-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-744-5p ; hsa-mir-20a-5p ; hsa-mir-548c-3p ; hsa-mir-219a-1-3p ; hsa-mir-571 ; hsa-mir-758-3p ; hsa-mir-1252-3p ; hsa-mir-6808-3p ; hsa-mir-7973 ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-137 ; hsa-mir-126-5p ; hsa-mir-378a-5p ; hsa-mir-608 ; hsa-mir-1200 ; hsa-mir-302f ; hsa-mir-3664-5p ; hsa-mir-3941 ; hsa-mir-4641 ; hsa-mir-4651 ; hsa-mir-219b-3p ; hsa-mir-4690-3p ; hsa-mir-4731-5p ; hsa-mir-4789-3p ; hsa-mir-4795-3p ; hsa-mir-5685 ; hsa-mir-6856-3p ; hsa-mir-8485 ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-214-3p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-342-5p ; hsa-mir-181d-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-3150b-3p ; hsa-mir-3927-3p ; hsa-mir-4433a-3p ; hsa-mir-4455 ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-4664-5p ; hsa-mir-4689 ; hsa-mir-4722-5p ; hsa-mir-4784 ; hsa-mir-6165 ; hsa-mir-6737-5p ; hsa-mir-6747-5p ; hsa-mir-6812-5p ; hsa-mir-6819-5p ; hsa-mir-6831-5p ; hsa-mir-6858-5p ; hsa-mir-7155-5p ; hsa-mir-580-3p ; hsa-mir-4324 ; hsa-mir-4251 ; hsa-mir-382-3p ; hsa-mir-4495 ; hsa-mir-4803 ; hsa-mir-30e-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-30d-5p ; hsa-mir-4642 ; hsa-mir-488-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-5583-3p ; hsa-mir-4517 ; hsa-mir-4796-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-544b ; hsa-mir-224-5p ; hsa-mir-1294 ; hsa-mir-4316 ; hsa-mir-5589-5p ; hsa-mir-4524b-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-219a-2-3p ; hsa-mir-17-3p ; hsa-mir-20b-3p ; hsa-mir-3529-5p ; hsa-mir-379-5p

Nearest miRNA

hsa-mir-103a-2/Upstream/410934; hsa-mir-1-1/Downstream/2285867;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/75679, chr20-CpG: 165/Downstream/207006

Nearest cancer related gene

NCOA3(OG, No orient, 0)

Upstream sequence

CAGCTTGATTCTTTCTAGTATATATCACAAGATATGTGGTAATACCTGTCTTTATTTTACTAGACATGCATATGCTGTAATTTGAAATAATTCCTTGTCC

Downstream sequence

TTTTATATAACTTTATTATTATTAttttttaagacagagtcttgctctgttgcccaggctggagtgcagtggcgcgatctcagctcactgcaacctctgc

Target sequence

CCCACTCCCTTATCAAGAAGATTATAGCATTTAAAAAAGATTGTTATAAATGTCTTACCAATGTTCTCCTGGGAAGCAAATACATTTTTACTTAATTGAACATACAATAATGGACTAAGTAATGGGAAAAAAAAATTCTTAAACTGAGTTAAGTTTATATAGCTCAAAAAAAGTGGTACCA