VISDB Viral Integration Site DataBase

VIS ID

TVIS30015940

Fusion event

HIV-RAB22A integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q13.32

Reference genome

Start

End

56901494/58326501 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-204-5p ; hsa-mir-211-5p ; hsa-mir-21-5p ; hsa-mir-128-3p ; hsa-mir-30b-5p ; hsa-mir-624-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-143-3p ; hsa-mir-106b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-20b-5p ; hsa-mir-520e ; hsa-mir-520f-3p ; hsa-mir-520a-3p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-519d-3p ; hsa-mir-520d-3p ; hsa-mir-1303 ; hsa-mir-302e ; hsa-mir-548t-5p ; hsa-mir-4756-3p ; hsa-mir-4770 ; hsa-mir-1273f ; hsa-mir-6088 ; hsa-mir-548az-5p ; hsa-mir-942-5p ; hsa-mir-4684-5p ; hsa-mir-7112-5p ; hsa-mir-181c-3p ; hsa-mir-27b-5p ; hsa-mir-590-5p ; hsa-mir-4712-3p ; hsa-mir-6884-3p ; hsa-mir-4497 ; hsa-mir-4328 ; hsa-mir-203a-3p ; hsa-mir-1249-3p ; hsa-mir-1292-3p ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-508-5p ; hsa-mir-6499-3p ; hsa-mir-6512-3p ; hsa-mir-6516-5p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6849-3p ; hsa-mir-766-3p ; hsa-mir-938

Nearest miRNA

hsa-mir-103a-2/Upstream/1004910; hsa-mir-1-1/Downstream/491114;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/16335, chr20-CpG: 91/Downstream/62441

Nearest cancer related gene

RAB22A(OG, No orient, 0)

Upstream sequence

atataatctttggtgtcttgatttctttttcatgaaataatgttttgcggatttaaccttgttgcatgtcccagagttttttgtttgtttgttttgtttt

Downstream sequence

gttttttattaaactgaggagtgatattctcttatatggatagaccataatttgtctattcctccccctagttgaggacatccaagttccagtttttgac

Target sequence

taatgttttgcggatttaaccttgttgcatgtcccagagttttttgtttgtttgttttgtttt