VISDB Viral Integration Site DataBase

VIS ID

TVIS30015953

Fusion event

HIV-IFNAR2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr21

Cytoband

q22.11

Reference genome

Start

End

34607618/33235222 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-106b-5p ; hsa-mir-484 ; hsa-mir-18a-5p ; hsa-mir-218-5p ; hsa-mir-18b-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-651-3p ; hsa-mir-4735-3p ; hsa-mir-3591-5p ; hsa-mir-5589-3p ; hsa-mir-6730-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-30a-5p ; hsa-mir-93-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-636 ; hsa-mir-651-5p ; hsa-mir-1258 ; hsa-mir-2115-5p ; hsa-mir-3678-3p ; hsa-mir-3714 ; hsa-mir-7162-5p ; hsa-mir-1273h-3p ; hsa-mir-142-3p ; hsa-mir-4280 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-6510-3p ; hsa-mir-1228-5p ; hsa-mir-6888-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-1273a ; hsa-mir-4522 ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-3120-5p ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-3664-5p ; hsa-mir-506-3p ; hsa-mir-124-3p ; hsa-mir-2467-3p ; hsa-mir-4771 ; hsa-mir-3166 ; hsa-mir-1265 ; hsa-mir-2392 ; hsa-mir-3910 ; hsa-mir-655-5p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-7150 ; hsa-mir-4737 ; hsa-mir-7977 ; hsa-mir-566 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6720-3p ; hsa-mir-381-5p ; hsa-mir-5690 ; hsa-mir-665 ; hsa-mir-4722-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-34b-3p ; hsa-mir-629-3p ; hsa-mir-4279 ; hsa-mir-7111-3p ; hsa-mir-513a-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-342-3p ; hsa-mir-4254 ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183

Nearest miRNA

hsa-let-7c/Upstream/2859844; hsa-mir-3197/Downstream/315440;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/4262, chr21-CpG: 49/Downstream/30988

Upstream sequence

tagcatatgataagcagtgaggacagttttgtcaccatcttggttttggcaggctttggccagcttctttactgcgtcctgtcttatcagcagggtcttt

Downstream sequence

tcaagatggagtcactctggttccaacacctctgacaAGAGCAGGGGGTGACCTGTCACCTGGGGCTCAGCAGGACAATAACTCTAGGAAAAACTGGAAA

Target sequence

gtgacctcctgttttatcacataactaagaatgcctaaccccctgggaatgcagcccagcaggtctcagcctcattttacccagctgctac