VISDB Viral Integration Site DataBase

VIS ID

TVIS30015954

Fusion event

HIV-SON integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr21

Cytoband

q22.11

Reference genome

Start

End

34918715/33546168 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-374b-5p ; hsa-mir-130b-3p ; hsa-mir-103a-3p ; hsa-mir-30a-5p ; hsa-mir-19b-3p ; hsa-mir-18a-5p ; hsa-mir-16-5p ; hsa-mir-1301-3p ; hsa-mir-760 ; hsa-mir-455-3p ; hsa-mir-324-3p ; hsa-mir-361-5p ; hsa-mir-222-3p ; hsa-mir-34a-5p ; hsa-mir-17-5p ; hsa-let-7b-5p ; hsa-mir-126-5p ; hsa-mir-412-3p ; hsa-mir-8070 ; hsa-mir-3678-3p ; hsa-mir-2467-3p ; hsa-mir-4766-5p ; hsa-mir-4289 ; hsa-mir-4282 ; hsa-mir-584-5p ; hsa-mir-758-5p ; hsa-mir-218-2-3p ; hsa-mir-7849-3p ; hsa-mir-4666a-3p ; hsa-mir-6732-3p ; hsa-mir-548as-3p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-4311 ; hsa-mir-4795-3p ; hsa-mir-340-5p ; hsa-mir-3163 ; hsa-mir-580-5p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548ap-3p ; hsa-mir-548t-3p ; hsa-mir-548aa ; hsa-mir-203a-3p ; hsa-mir-510-3p ; hsa-mir-1303 ; hsa-mir-3140-3p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-100-3p ; hsa-mir-561-3p ; hsa-mir-548at-5p ; hsa-mir-142-5p ; hsa-mir-5590-3p ; hsa-mir-3529-3p ; hsa-mir-135b-3p ; hsa-mir-4278 ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-4652-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6732-5p ; hsa-mir-6805-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-1273d ; hsa-mir-1295b-5p ; hsa-mir-1912 ; hsa-mir-21-3p ; hsa-mir-3180-5p ; hsa-mir-3591-3p ; hsa-mir-375 ; hsa-mir-3919 ; hsa-mir-520a-5p ; hsa-mir-525-5p ; hsa-mir-6739-3p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-1225-5p ; hsa-mir-1229-5p ; hsa-mir-153-5p ; hsa-mir-186-5p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-3133 ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-4422 ; hsa-mir-4720-3p ; hsa-mir-4804-3p ; hsa-mir-519d-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-520f-3p ; hsa-mir-526b-3p ; hsa-mir-548az-5p ; hsa-mir-548c-3p ; hsa-mir-548e-5p ; hsa-mir-548n ; hsa-mir-548t-5p ; hsa-mir-551b-5p ; hsa-mir-555 ; hsa-mir-5692a ; hsa-mir-633 ; hsa-mir-93-5p

Nearest miRNA

hsa-let-7c/Upstream/3170790; hsa-mir-3197/Downstream/4494;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/2792, chr21-CpG: 86/Downstream/41914

Upstream sequence

GCATTATTAGTGGTGAATATCTAAAATAGGAAAAAGGTAAAACATCTGACAGTCAGTACAACATATGATTATTGTAATTAATTGGATTTTTTTATTAATG

Downstream sequence

ATTTTCTTTTAAGATTTTTTTGAAATTTGAAGGTTAATGTTAGTTTTTGACTTCAGTATTTAAGATATTTATTAAATTAAAAACTTTAggctgggtgcga

Target sequence

GTATGATAAAATATTAATGAATTTCGATAACTTTTCATGTCAAGTGGAAGGAATGAAGGCCAGCTGAATGGTGAAACAAATACACCCATTGAAGGAAACCAGGCGGGTGATGCAGCTGCCTCTGCCAGGAGTCTACCAAATGAAGAAATAGTGCAGAAGATAGAGGAAGTACTTTCTGGGGTCTTAGATACAGAACTACGATATAAGCCAGGTAAGTTGGAGATAATTAACTGTCTCAAAA