VISDB Viral Integration Site DataBase

VIS ID

TVIS30015958

Fusion event

HIV-AGPAT3 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr21

Cytoband

q22.3

Reference genome

Start

End

45296175/43876116 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-744-5p ; hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-24-3p ; hsa-mir-18a-3p ; hsa-mir-149-5p ; hsa-mir-100-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p

Nearest miRNA

hsa-let-7c/Upstream/266127; hsa-mir-6815/Downstream/1602150;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/10098, chr21-CpG: 24/Downstream/67476

Upstream sequence

aaggtcaagtgatcctctcacctcagcctcccaagtgctgggattacaggcaccatgcccagcctaacctgttcttttaattttcatttttttaatagtt

Downstream sequence

tttgaatttcttgagggttggactccgccacttgttctgctacctcttgctccctgatccttgcctgtcacacactttgtgattttggattgtgggctca

Target sequence

atatttttcattcctgaaagttctctttgtttttttccaagtttgcctctcctcttgtttggtattcttttccttacacttatttttattttctctttatgtctaaacatacttattttctatactgtaactaataataccaaagtaataccgataataatattaacaaatactaaaa