Basic Information
VIS ID
TVIS30015970
Fusion event
HIV-DIP2A integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
End
47990755/46570609 (Hg38)
Orient
+
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-let-7c/Upstream/1092283;
Nearby gene
DIP2A(No orient, 14090)
Upstream sequence
ACCTCCATATACTTCTTACTTTTTCTTGTGGGTTATTTGTATTTTGGTTCTATCTGTTTTGGTGCAGATGGTTTTTTAGATGTTATATTTATGCAAACTG
Downstream sequence
aagacctgaatataagcatccaagtagctcaacaaattccaagtaagatgaactcaaagagaccacacagataccaacatttcagaagccaaagccagag
Target sequence
GTTATTGTGTTTGATTTCAGATTATGAATATAGCTGATTTATTTCAAAGTGGTTCTACTGGAATGATCAGCATAAACCAATGGGGAGTACATGGCAGAGAAATAACTAACCTCCAGTATTTGCCTGGTTCCTGCCACAGTGCTGGCCTTCATGTtggcagttccagaagtggggttgagggagagagagaatacttgaagaaataatggctgaagacttcctaaatttgatga
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate