VISDB Viral Integration Site DataBase

VIS ID

TVIS30015978

Fusion event

HIV-DIP2A integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr21

Cytoband

q22.3

Reference genome

Start

End

47990359/46570614 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-423-5p ; hsa-mir-484 ; hsa-mir-125a-5p ; hsa-mir-142-3p ; hsa-mir-548c-3p ; hsa-mir-4435 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-3194-5p ; hsa-mir-1204 ; hsa-mir-132-5p ; hsa-mir-6504-3p ; hsa-mir-3934-5p ; hsa-mir-6858-3p ; hsa-mir-552-3p ; hsa-mir-6818-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-4496 ; hsa-mir-6124 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-583 ; hsa-mir-7641 ; hsa-mir-6778-3p ; hsa-mir-4695-3p ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-548aw ; hsa-mir-513b-5p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-8063 ; hsa-mir-1179 ; hsa-mir-551b-5p ; hsa-mir-3161 ; hsa-mir-891b ; hsa-mir-550b-3p ; hsa-mir-3664-5p ; hsa-mir-514a-5p ; hsa-mir-4714-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-3157-5p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-676-5p ; hsa-mir-4691-3p ; hsa-mir-5697 ; hsa-mir-6741-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6867-3p ; hsa-mir-630 ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469

Nearest miRNA

hsa-let-7c/Upstream/1092288;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/71799, chr21-CpG: 21/Downstream/28015

Nearby gene

DIP2A(No orient, 14095)

Upstream sequence

CATATACTTCTTACTTTTTCTTGTGGGTTATTTGTATTTTGGTTCTATCTGTTTTGGTGCAGATGGTTTTTTAGATGTTATATTTATGCAAACTGGTTAT

Downstream sequence

TGTGTTTGATTTCAGATTATGAATATAGCTGATTTATTTCAAAGTGGTTCTACTGGAATGATCAGCATAAACCAATGGGGAGTACATGGCAGAGAAATAA

Target sequence

cagtccttatggtcaagttttttcttactgacatgtaggagtctctttctattaagaatTATAACCTCCATATACTTCTTACTTTTTCTTGTGGGTTATTTGTATTTTGGTTCTATCTGTTTTGGTGCAGATGGTTTTTTAGATGTTATATTTATGCAAACTGGTTAT