VISDB Viral Integration Site DataBase

VIS ID

TVIS30016065

Fusion event

HIV-PRR14L integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q12.2

Reference genome

Start

End

32096244/31700156 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-27a-3p ; hsa-mir-1914-5p ; hsa-mir-1254 ; hsa-mir-505-5p ; hsa-mir-671-5p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-23b-3p ; hsa-mir-92a-3p ; hsa-mir-5011-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-4470 ; hsa-mir-4268 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-3714 ; hsa-mir-3910 ; hsa-mir-124-3p ; hsa-mir-506-3p ; hsa-mir-302c-5p ; hsa-mir-3138 ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-545-5p ; hsa-mir-4686 ; hsa-mir-3974 ; hsa-mir-4796-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-500a-3p ; hsa-mir-203a-3p ; hsa-mir-6804-3p ; hsa-mir-633 ; hsa-mir-4703-5p ; hsa-mir-4643 ; hsa-mir-3942-5p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-591 ; hsa-mir-410-3p ; hsa-mir-5692b ; hsa-mir-5692c ; hsa-mir-888-3p ; hsa-mir-1277-5p ; hsa-mir-606 ; hsa-mir-3124-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-3607-3p ; hsa-mir-130b-5p ; hsa-mir-3140-5p ; hsa-mir-4668-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-1183 ; hsa-mir-1284 ; hsa-mir-1-3p ; hsa-mir-182-3p ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-2052 ; hsa-mir-2053 ; hsa-mir-206 ; hsa-mir-214-3p ; hsa-mir-21-5p ; hsa-mir-3125 ; hsa-mir-3137 ; hsa-mir-3619-5p ; hsa-mir-377-5p ; hsa-mir-3916 ; hsa-mir-4291 ; hsa-mir-4469 ; hsa-mir-4684-5p ; hsa-mir-4751 ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-520f-5p ; hsa-mir-548n ; hsa-mir-5571-5p ; hsa-mir-5579-3p ; hsa-mir-5690 ; hsa-mir-569 ; hsa-mir-590-5p ; hsa-mir-6086 ; hsa-mir-613 ; hsa-mir-655-5p ; hsa-mir-6787-3p ; hsa-mir-6859-5p ; hsa-mir-761 ; hsa-mir-8055 ; hsa-mir-877-5p ; hsa-mir-922

Nearest miRNA

hsa-mir-1286/Upstream/78625; hsa-let-7a-3/Downstream/1736426;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/37819, chr22-CpG: 58/Downstream/49493

Upstream sequence

cgccagacactgagacagtaactgccactaatgcctgggcaacagaacctttgtgactgagtgcttttcaatcttttgttttccttaaatataatgctag

Downstream sequence

aacaaggttcttcagacatataaatgcaagagagaatagaactgataatgaatcctatttcattcgagtaataaatactacccgatctcggatatctgaa

Target sequence

atcactctatgattttttggcatataacttgaaagaagtggaaataattgaatgactttactatattaaaactctttcctctcccaactacttatttatgta