VISDB Viral Integration Site DataBase

VIS ID

TVIS30016094

Fusion event

HIV-PACSIN2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q13.2

Reference genome

Start

End

43372689/42977015 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-193b-3p ; hsa-mir-7161-5p ; hsa-mir-8087 ; hsa-mir-548u ; hsa-mir-548g-3p ; hsa-mir-548av-3p ; hsa-mir-3691-5p ; hsa-mir-6124 ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-4433b-3p

Nearest miRNA

hsa-mir-1281/Upstream/1053718; hsa-let-7a-3/Downstream/2223939;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/106738, chr22-CpG: 113/Downstream/37400

Nearby gene

PACSIN2(No orient, 17134)

Upstream sequence

CTAGAAGTTTCTCCAGCCGACACAATACCTCatgttatgctatccttgcattgctagagtaaaccttgtttggtcatgaaaaattaatcttttaatacac

Downstream sequence

tactgtattcaaattattatttgatttagaaACCTACTTTAAAATGTTGCAAATATATAAACATATATATGCATTAATAGACACATATTACATTCATATG

Target sequence

GTGAATTGTGATGTATaacattaactgagcacttattatgcaccaaacccaggtctaatcatttcacagataccccatttcgtccttccatcaaccctatacagcagtattgtaattgtcctgccaattttatagatgaggagactgaagctcagggagattaactaatttggctaacgtcagagaattagtaaatggcaggactggggcaaaccatgctctaatccctgagCTAGAAGTTTCTCCAGCCGACAC