VISDB Viral Integration Site DataBase

VIS ID

TVIS30016114

Fusion event

HIV-EDEM1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

p26.1

Reference genome

Start

End

5240495/5199006 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-204-5p ; hsa-mir-335-5p ; hsa-mir-32-5p ; hsa-mir-125b-5p ; hsa-mir-100-5p ; hsa-mir-96-5p ; hsa-mir-581 ; hsa-mir-25-3p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-4330 ; hsa-mir-4793-3p ; hsa-mir-6715a-3p ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-491-3p ; hsa-mir-1468-3p ; hsa-mir-1301-3p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548x-5p ; hsa-mir-548aj-5p ; hsa-mir-4660 ; hsa-mir-5047 ; hsa-mir-548aw ; hsa-mir-10b-3p ; hsa-mir-3922-5p ; hsa-mir-6885-3p ; hsa-mir-2052 ; hsa-mir-5692a ; hsa-mir-548c-3p ; hsa-mir-4261 ; hsa-mir-549a ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-888-5p

Nearest miRNA

hsa-let-7g/Downstream/51171;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/10501, chr3-CpG: 71/Downstream/1662130

Upstream sequence

CCAACTGTGCTTCACATAGGAGAGAGTGGCTTAGTGTGACGTCGTATCTACATACCCAAAATAGGAATCATAATTCTAGATCACTTTTTAAAAAGGACAT

Downstream sequence

AGAGCTGATTATTCATATGTTTTGTTTCTTTTAAATCAGTCACTGGTTTTATCCTGTGCTCCAAAAGATATTACCACTATTTCTCAAAGTGTTTAGGCAT

Target sequence

TATGTCCTTATGATGTCATTATAGTCTCAGGGTTGTCATAAAATTTAGAGTGGAATGAAATAATTTTGATTCAGGTTAATCTATAAAGTTTGATGCCCAACTGTGCTTCACATAGGAGAGAGTGGCTTAGTGTGACGTCGTATCTACATACCCAAAATAGGAATCATAATTCTAGATCACTTTTTAAAAAGGACAT