VISDB Viral Integration Site DataBase

VIS ID

TVIS30016121

Fusion event

HIV-KAT2B integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

p24.3

Reference genome

Start

End

20153968/20112700 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-17-5p ; hsa-mir-92b-3p ; hsa-mir-142-3p ; hsa-mir-127-5p ; hsa-mir-539-5p

Nearest miRNA

hsa-mir-12127/Upstream/797769; hsa-let-7g/Downstream/24865;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/71766, chr3-CpG: 62/Downstream/73097

Upstream sequence

TTCATTCTGTGATTATCATTCCGCCTAGATCAGCGCTTGGTCAGGAAGGTAAAAGGCGTAATTTGAAAAGGCTGGCTAGGTATGATATAGCCTTCCTTCC

Downstream sequence

CCATGCCATTCTGAACTGCTGATGTAGAGAATAGAATTTGAGAGGAAATATTCTTTGATCAAAGATTGATGAAACACTGTTTTGTTTGAGAAACTAGATT

Target sequence

GAAATGCATTTTTAATGCTAAAAACCAAAAATTTAAGCTAAGCGGTTGGATGCTGGTGGGATAGGCCAAGGGTGCAGTTGATGACTTCTCATGGAGCAGTAACAGCGAGAAATGAATGAGACAGTTCATTCTGTGATTATCATTCCGCCTAGATCAGCGCTTGGTCAGGAAGGTAAAAGGCGTAATTTGAAAAGGCTGGCTAGGTATGATATAGCCTTCCTTCC