VISDB Viral Integration Site DataBase

VIS ID

TVIS30016151

Fusion event

HIV-RBM15B integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

p21.2

Reference genome

Start

End

51434598/51397351 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-93-3p ; hsa-mir-615-3p ; hsa-mir-423-3p ; hsa-mir-222-3p ; hsa-mir-182-5p ; hsa-mir-34a-5p ; hsa-mir-197-3p ; hsa-mir-4724-3p ; hsa-mir-3667-3p ; hsa-mir-6886-5p

Nearest miRNA

hsa-mir-12127/Upstream/722188; hsa-let-7g/Downstream/870927;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/4045, chr3-CpG: 76/Downstream/101975

Upstream sequence

GTGGGGCGGGTGAGTGAAAAGGTGGAAATCCCTGGTACCTTGCCTGGTGGTTACACAGTTTAACCATAGGCCAATTTTAGGGGCCTCTGAAGTATCTTTC

Downstream sequence

TACAAACGCAGACAAGCTCCACTACCCCTAACCTGCCAGGATGCTCAAGTCCACTGTCACAATCCCTTTCAGAAAACATTAGTGGCCGCTGCCCCAGCTA

Target sequence

AACAAACTGAGCAGCTGTTATTTGGGCAAAATCAAAGGAAGAAAGAGACTATGGTCTTCTATTTATTGTGGGAAGGAAAACAGGGTGGGGCGGGTGAGTGAAAAGGTGGAAATCCCTGGTACCTTGCCTGGTGGTTACACAGTTTAACCATAGGCCAATTTTAGGGGCCTCTGAAGTATCTTTC