Basic Information
VIS ID
TVIS30016157
Fusion event
HIV-RBM15B integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.2
Reference genome
End
51434905/51397346 (Hg38)
Orient
+
Location type
Exonic
Target gene
Nearest miRNA
hsa-mir-12127/Upstream/722183; hsa-let-7g/Downstream/870932;
Upstream sequence
ACAGGGTGGGGCGGGTGAGTGAAAAGGTGGAAATCCCTGGTACCTTGCCTGGTGGTTACACAGTTTAACCATAGGCCAATTTTAGGGGCCTCTGAAGTAT
Downstream sequence
CTCCTTAGCTTTGCCAACTCCATCCTCCAAAACTTCCCAGAATACCTCCCTTTCCAGTTCTACCAAATCTGTACTTGGGAGCAGCCTGCTGGATCCAGAA
Target sequence
CTTTCTACAAACGCAGACAAGCTCCACTACCCCTAACCTGCCAGGATGCTCAAGTCCACTGTCACAATCCCTTTCAGAAAACATTAGTGGCCGCTGCCCCAGCTACAGAGACGGCCGAAATGCTTTCA
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate