Basic Information
VIS ID
TVIS30016165
Fusion event
HIV-TMF1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.1
Reference genome
End
69079213/69030105 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/1804578; hsa-mir-12124/Downstream/18853;
Upstream sequence
ACCTGATTACAGGACAGAAAAAAAAATCACATACACATACAGCCCAGAGACCAAAATACCAAGTCAATTCTGATTTCAAACATTTAATGATGCAAGTAGC
Downstream sequence
CACACTTAAAACTGATAACTATTTATTGCCTAAGGCAGGACTGTCTACTGAGACAAATGAACCAATCTTAACTTATACCTGCTTTATCACTCTTTTCCAA
Target sequence
ACCAAGTCAATTCTGATTTCAAACATTTAATGATGCAAGTAGC
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate