Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS30016165
Basic Information
VIS ID
TVIS30016165
Fusion event
HIV-TMF1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
69079256/69030105 (Hg38)
End
69079213/69030105 (Hg38)
Orient
-
Location type
Intronic
Target gene
TMF1
miRNAs that regulate target gene
hsa-mir-32-5p
;
hsa-mir-1914-5p
;
hsa-mir-484
;
hsa-mir-424-5p
;
hsa-mir-331-3p
;
hsa-mir-362-5p
;
hsa-mir-92a-3p
;
hsa-mir-4324
;
hsa-mir-607
;
hsa-mir-3671
;
hsa-mir-32-3p
;
hsa-mir-5692a
;
hsa-mir-363-3p
;
hsa-mir-92b-3p
;
hsa-mir-25-3p
;
hsa-mir-367-3p
;
hsa-mir-3613-3p
;
hsa-mir-561-3p
;
hsa-mir-548at-5p
;
hsa-mir-3149
;
hsa-mir-5096
;
hsa-mir-6855-5p
;
hsa-mir-3170
;
hsa-mir-197-3p
;
hsa-mir-6832-5p
;
hsa-mir-411-5p
;
hsa-mir-193b-5p
;
hsa-mir-4755-3p
;
hsa-mir-1273f
;
hsa-mir-6890-5p
;
hsa-mir-4735-5p
;
hsa-mir-181d-5p
;
hsa-mir-181c-5p
;
hsa-mir-181a-5p
;
hsa-mir-181b-5p
Nearest miRNA
hsa-let-7g/Upstream/1804578; hsa-mir-12124/Downstream/18853;
Nearest TSS
ENST00000440867/Upstream/2007;
ENST00000596274/Downstream/4991;
Nearest CpG islands
None/Target,
chr3-CpG: 148/Upstream/16066
,
chr3-CpG: 39/Downstream/21965
Upstream sequence
ACCTGATTACAGGACAGAAAAAAAAATCACATACACATACAGCCCAGAGACCAAAATACCAAGTCAATTCTGATTTCAAACATTTAATGATGCAAGTAGC
Downstream sequence
CACACTTAAAACTGATAACTATTTATTGCCTAAGGCAGGACTGTCTACTGAGACAAATGAACCAATCTTAACTTATACCTGCTTTATCACTCTTTTCCAA
Target sequence
ACCAAGTCAATTCTGATTTCAAACATTTAATGATGCAAGTAGC
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Sample Information
×
Sample name
PT2
Sample type
PBMC
Age
25
Gender
Female
CpG Island Information
×
Download
Curate