VISDB Viral Integration Site DataBase

VIS ID

TVIS30016176

Fusion event

HIV-KPNA1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q21.1

Reference genome

Start

End

122189705/122470926 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-34a-5p ; hsa-mir-103a-3p ; hsa-mir-30a-5p ; hsa-mir-16-5p ; hsa-mir-186-5p ; hsa-mir-4662a-5p ; hsa-mir-6501-3p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-3662 ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6850-3p ; hsa-mir-4438 ; hsa-mir-6771-3p ; hsa-mir-6504-3p ; hsa-mir-6508-5p ; hsa-mir-8067 ; hsa-mir-383-3p ; hsa-mir-3065-3p ; hsa-mir-802 ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-548n ; hsa-mir-330-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-194-5p ; hsa-mir-132-3p ; hsa-mir-212-3p ; hsa-mir-6871-5p ; hsa-mir-219a-1-3p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-let-7g/Upstream/1421211; hsa-mir-12124/Downstream/690868;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/54689, chr3-CpG: 124/Downstream/43132

Upstream sequence

aaagacaaaactagaaacaaaaaaaaaaggctaacaaatagaaatcagtaacaaatatggtaaatatcaatccaactatctttgcaattcctttgactgt

Downstream sequence

caatagtctaagtgcaccaattaaaagagattgtcagaTAcatcttggagtcatcctattcaggggtgagggaactggagtattatttatatatcatctt

Target sequence

aacaaatagaaatcagtaacaaatatggtaaatatcaatccaactatctttgcaattcctttgactgt