VISDB Viral Integration Site DataBase

VIS ID

TVIS30016180

Fusion event

HIV-GK5 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q23

Reference genome

Start

End

141903707/142184889 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-340-5p ; hsa-mir-124-3p ; hsa-mir-21-5p ; hsa-mir-4279 ; hsa-mir-5571-5p ; hsa-mir-374a-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-4753-3p ; hsa-mir-130b-5p ; hsa-mir-7110-3p ; hsa-mir-6817-3p ; hsa-mir-3160-5p ; hsa-mir-4668-5p ; hsa-mir-145-3p ; hsa-mir-5572 ; hsa-mir-4260 ; hsa-mir-450a-2-3p ; hsa-mir-1227-5p ; hsa-mir-185-3p ; hsa-mir-4283 ; hsa-mir-4489 ; hsa-mir-3649 ; hsa-mir-6778-3p ; hsa-mir-150-5p ; hsa-mir-6787-3p ; hsa-mir-6814-5p ; hsa-mir-3691-3p ; hsa-mir-6740-5p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-6076 ; hsa-mir-6797-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-6501-3p ; hsa-mir-508-5p ; hsa-mir-6084 ; hsa-mir-3194-5p ; hsa-mir-6821-3p ; hsa-mir-4454 ; hsa-mir-6790-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-498 ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6748-3p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-5088-3p ; hsa-mir-1207-3p ; hsa-mir-4639-3p ; hsa-mir-3617-3p ; hsa-mir-603 ; hsa-mir-182-5p ; hsa-mir-4470 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-890 ; hsa-mir-4449 ; hsa-mir-4284 ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-6890-3p ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-874-3p ; hsa-mir-3157-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-891a-3p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-146b-3p ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-7976 ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1915-5p ; hsa-mir-5693 ; hsa-mir-6749-3p ; hsa-mir-5089-5p ; hsa-mir-6878-3p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-6818-3p ; hsa-mir-4684-5p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-339-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-6732-3p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548c-3p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-let-7g/Upstream/7746983; hsa-mir-1224/Downstream/9380987;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/35118, chr3-CpG: 71/Downstream/40215

Upstream sequence

tgagatcatgccattgcactccagtctgggagacaagagtgaaactccatctcaaaaacaacaacaacaacaacaacTCATTTAAAGAACCCTCTGTCAC

Downstream sequence

TAATTGGTAACTCTTCCAGCCATACCTTAATCTAACCCTGCACCTATGCCTAGATTGAATAAGACCGATCCTCTCTAAATGATAATGATTTTGTAACTTG

Target sequence

cTCATTTAAAGAACCCTCTGTCAC