VISDB Viral Integration Site DataBase

VIS ID

TVIS30016183

Fusion event

HIV-PHC3 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q26.2

Reference genome

Start

End

169873103/170155105 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-218-5p ; hsa-mir-196a-5p ; hsa-mir-103a-3p ; hsa-mir-93-5p ; hsa-mir-16-5p ; hsa-mir-32-3p ; hsa-mir-4775 ; hsa-mir-2113 ; hsa-mir-5010-3p ; hsa-mir-4701-5p ; hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-6832-5p ; hsa-mir-4735-5p ; hsa-mir-500b-3p ; hsa-mir-411-5p ; hsa-mir-296-3p ; hsa-mir-590-3p ; hsa-mir-3692-3p ; hsa-mir-5689 ; hsa-mir-330-3p ; hsa-mir-323a-3p ; hsa-mir-4422 ; hsa-mir-186-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-4503 ; hsa-mir-6792-5p ; hsa-mir-633 ; hsa-mir-922 ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p

Nearest miRNA

hsa-let-7g/Upstream/1603156; hsa-mir-1224/Downstream/267998;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/116046, chr3-CpG: 63/Downstream/26053

Nearest cancer related gene

PHC3(TSG, No orient, 0)

Upstream sequence

CTTCATATCTCAAGTCACACTCCACAAAGAAACTCACTTACTGAGCCCGATTACTGCAAGCTGTCTCCCCACTGACGCTAATTCTAGGAGTCACCAGAAA

Downstream sequence

TTTTGTGTCCACTGCTGAGTAAAAAGGCAGCAAAACAACATGTAGAGTATCATTCATATAGGTACATACAAATGTCTGTGTGTGTATATGTATCACAAAT

Target sequence

GAAACAAGTCTGCCAGAAAAAGCCACTTAACTCCCAACTACCTGTTAATGTCCTCAAAAGGAGTTTCCAACCGATTACTACCCATAGCCAAAGTCCATTTGAGAGTTGCCTCTACCGTTTCACTGATCAGAATCAATCAGGTATACCCTAAATAGAGAAACATTTCACATTAAAAGAATGATGTATCTGTATTCAGTGGCATTAAAAGAT