VISDB Viral Integration Site DataBase

VIS ID

TVIS30016187

Fusion event

HIV-VPS8 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q27.2

Reference genome

Start

End

184690037/184972591 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-6741-5p ; hsa-mir-7977 ; hsa-mir-6748-5p ; hsa-mir-876-3p ; hsa-mir-323a-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-92a-2-5p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-3194-5p ; hsa-mir-769-5p ; hsa-mir-6761-5p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-6858-3p ; hsa-mir-548s ; hsa-mir-7156-3p ; hsa-mir-642b-5p ; hsa-mir-3926 ; hsa-mir-5189-3p ; hsa-mir-3190-5p ; hsa-mir-1184 ; hsa-mir-1208 ; hsa-mir-6807-3p ; hsa-mir-217 ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-4684-5p ; hsa-mir-4786-5p ; hsa-mir-6849-3p ; hsa-mir-3675-3p ; hsa-mir-6771-3p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-651-5p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-6514-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-3934-5p ; hsa-mir-383-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-3194-3p ; hsa-mir-9-5p ; hsa-mir-6728-3p ; hsa-mir-6800-3p ; hsa-mir-2355-5p ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-744-5p ; hsa-mir-6087

Nearest miRNA

hsa-let-7g/Upstream/731102; hsa-mir-1248/Downstream/280619;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/160124, chr3-CpG: 137/Downstream/179806

Upstream sequence

aaccttggttgcacactagagtcacctggggagctttgaacaattccagtactcaggctgcaccccagatcaattaaattaaagtctctggggatgaaac

Downstream sequence

ccagccaccaccatgttttaaagctcccttcatgattccaatgtgcagccaaggttggaaccactgCTATCACAGATCCCAGATGGCACAAAAGAAGAAA

Target sequence

AAGGCTTTATATTCATGGTTTGGCTGTGCTGCAAAACTTAAGGTGCATGAATGCTAGATGTGCCTGTTCTCTTTGGACTGAGATTTTGTGTATGCCATGTAGTTGCACCAGAGATAGGTCATCATTTATCATCGTCTCTATTCCCTGTGGTGAAAGTAGGCATGAAGAACTGGAGGAAAGCCCTCAAGGGCTACAGAGAAAGCTGAAGAAAGGTTAAAGAAGCCTATGGTGTACTAAttctcaaccttggttgca