VISDB Viral Integration Site DataBase

VIS ID

TVIS30016193

Fusion event

HIV-ACAP2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q29

Reference genome

Start

End

195099455/195378658 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-378a-3p ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-1273e ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-219b-3p ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-302f ; hsa-mir-4762-3p ; hsa-mir-505-3p ; hsa-mir-138-2-3p ; hsa-mir-1228-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-409-5p ; hsa-mir-4539 ; hsa-mir-154-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-7703 ; hsa-mir-661 ; hsa-mir-4696 ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-6776-5p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-508-5p ; hsa-mir-3120-3p ; hsa-mir-129-5p ; hsa-mir-6885-3p ; hsa-mir-4668-5p ; hsa-mir-103a-2-5p ; hsa-mir-1276 ; hsa-mir-6776-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-4314 ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-3975 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-383-3p ; hsa-mir-514a-5p ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p

Nearest miRNA

hsa-let-7g/Upstream/244078; hsa-mir-4797/Downstream/320743;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/106909, chr3-CpG: 142/Downstream/63504

Upstream sequence

ACATATATACCTTGCTTCAAggccaggtgcggtggctcacgcctgtaatcccaacactatggaaggccaaggcgggtggatcactttaggccaggagttt

Downstream sequence

ggtacatgcctgtagccccagcaacttgggaggctgaggcaagagaatcacctgaacccgggaggcggaggctgcagtgagccaagatcgcaccactgca

Target sequence

gagaccagcctagccaccatgccaaaatcccatctctactaaaaatacaaaaattagccaggcatggt