Basic Information
VIS ID
TVIS30016195
Fusion event
HIV-chr3 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
GRCh37/hg19
Start
195867998/196141127 (Hg38)
End
195868021/196141127 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/258732; hsa-mir-4797/Downstream/1152751;
Nearest TSS
ENST00000440867/Upstream/58938; ENST00000457079/Downstream/1509;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/58779, chr3-CpG: 34/Downstream/66214
Nearby gene
LINC00885(+1509) ;
Upstream sequence
gtggtgcttgtggtggtctcagctacttgggaggctgaggtgggaggatcacttgagcccagaaggcagacagaggttgcagcactgcactccagcctcg
Downstream sequence
ACAGGAAAACCCAACAAAACACAGACGCCGCCCCCACCTGCTTTGCCCGACTCTGCAGAGTCCCACCCGGATGATCTGGGGGAGGGAAGGAGTTTGTCTT
Target sequence
gtgacagagtgtgactcCAAGTC
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate