VISDB Viral Integration Site DataBase

VIS ID

TVIS30016225

Fusion event

HIV-TMEM33 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

p13

Reference genome

Start

End

41944291/41942464 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-155-5p ; hsa-let-7b-5p ; hsa-mir-615-3p ; hsa-mir-328-3p ; hsa-mir-191-5p ; hsa-mir-590-3p ; hsa-mir-4775 ; hsa-mir-4804-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3122 ; hsa-mir-3913-5p ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-4284 ; hsa-mir-24-3p ; hsa-mir-342-3p ; hsa-mir-1228-3p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-545-5p ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-4720-3p ; hsa-mir-4635 ; hsa-mir-580-5p ; hsa-mir-1273a ; hsa-mir-4252 ; hsa-mir-212-5p ; hsa-mir-3120-5p ; hsa-mir-3664-5p ; hsa-mir-4522 ; hsa-mir-4524a-3p ; hsa-mir-6510-3p ; hsa-mir-6888-3p ; hsa-mir-1273d ; hsa-mir-1273f ; hsa-mir-143-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-25-3p ; hsa-mir-3130-3p ; hsa-mir-3160-3p ; hsa-mir-32-5p ; hsa-mir-3612 ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4325 ; hsa-mir-4459 ; hsa-mir-4487 ; hsa-mir-4497 ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-4708-5p ; hsa-mir-4770 ; hsa-mir-552-5p ; hsa-mir-558 ; hsa-mir-566 ; hsa-mir-583 ; hsa-mir-6086 ; hsa-mir-6088 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-652-3p ; hsa-mir-665 ; hsa-mir-6789-3p ; hsa-mir-6807-5p ; hsa-mir-6840-3p ; hsa-mir-7703 ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-95-3p

Nearest miRNA

hsa-mir-12113/Upstream/1440345; hsa-mir-1243/Downstream/5710205;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/6857, chr4-CpG: 21/Downstream/39441

Upstream sequence

AACTATATTAGGGAGTTAGGGTTCTTCTAATACTTGGATATAGGTTGGTGTCTTGCTTGTCAATTGGAAACTGGGACCCTTGAATTCCTAAATGAGTTAT

Downstream sequence

GGTTATAATGAATTTGATACTCAGATTATGTTACAGCAATCACTATTTCCTGTCATATTAGGCCTTCAGTTAGTATAGAAAAATACAATGGTTCATTTCT

Target sequence

TATACATATATGATCTCTACTTAGGAAATGGACATTTTTCTTAATTCTTGTTAGAGGTGGGAATGAGTTGGTCAGGATATTAATTTGGAGAACTATATTAGGGAGTTAGGGTTCTTCTAATACTTGGATATAGGTTGGTGTCTTGCTTGTCAATTGGAAACTGGGACCCTTGAATTCCTAAATGAGTTAT