VISDB Viral Integration Site DataBase

VIS ID

TVIS30016226

Fusion event

HIV-SLC30A9 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

p13

Reference genome

Start

End

42005944/42004178 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-342-3p ; hsa-mir-1298-5p ; hsa-mir-222-5p ; hsa-mir-6740-3p ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-545-5p

Nearest miRNA

hsa-mir-12113/Upstream/1502059; hsa-mir-1243/Downstream/5648491;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/13070, chr4-CpG: 219/Downstream/146571

Upstream sequence

TATACAAGTTCGTTTAGCTGAGGATCTTTTGTGGGAAAGgcacatttaagatgttactcgattgttttttggcttccactaattgttgagaagtcagata

Downstream sequence

ttatgcctttgtttgtatattttttctatttgacagcattttaaatttgattagctttaatttgaaagtctttttctttggtataaatggcagttttatt

Target sequence

ctccaacttatgtgctatttgttggctaatattttCTGTCTATTCTGCTCTTTCTCTGCTATAAAGTATGCATTGTTGCTTGCTTAGATTTATTCAGAATCTTTGTTAGCCACCTTTTCTTATGTCTGATCTTTCTGTCTGATGTACATCCTATACAAGTTCGTTTAGCTGAGGATCTTTTGTGGGAAAGgcacatttaagatgttactcgattgttttttggcttccactaattgttgagaagtcagata