VISDB Viral Integration Site DataBase

VIS ID

TVIS30016227

Fusion event

HIV-TXK integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

p12

Reference genome

Start

End

48116092/48113959 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-340-5p ; hsa-mir-503-3p ; hsa-mir-6861-5p ; hsa-mir-186-3p ; hsa-mir-382-3p ; hsa-mir-3159 ; hsa-mir-541-5p ; hsa-mir-551b-5p ; hsa-mir-619-5p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-1287-5p ; hsa-mir-3135b ; hsa-mir-6778-3p ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-6878-3p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-212-5p ; hsa-mir-1224-3p ; hsa-mir-141-5p ; hsa-mir-101-5p ; hsa-mir-6813-3p ; hsa-mir-1976 ; hsa-mir-23a-5p ; hsa-mir-23b-5p ; hsa-mir-3653-5p ; hsa-mir-4279 ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-498 ; hsa-mir-5089-5p ; hsa-mir-5571-5p ; hsa-mir-6506-5p ; hsa-mir-6727-3p ; hsa-mir-6747-3p

Nearest miRNA

hsa-mir-12113/Upstream/461216; hsa-mir-1243/Downstream/4598723;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/96537, chr4-CpG: 49/Downstream/155386

Upstream sequence

acataaatcttttagcatagtatctgatatacaggaagctcctgttaaatgttagctttTTCTGTTAACATGCTGCCTTGGATTTAATTCTTACAGAGTC

Downstream sequence

catacatgaaataaaaattaagtggagaacaatgccgcacacggtgggaatgcaatggaatgaacaatgaaatctaaaggatcaggaaaggatcccagat

Target sequence

ATTTACTGCCACCAAAGTATAAGATACACCGGTAgttttggggagatagataactaagataggattcttgcccttaaagggaaaaaatacgtattggagcacagacctataaacaa