VISDB Viral Integration Site DataBase

VIS ID

TVIS30016234

Fusion event

HIV-BMP2K integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

q21.21

Reference genome

Start

End

79720885/78799475 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-98-5p ; hsa-let-7e-5p ; hsa-mir-1228-3p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-1277-5p ; hsa-mir-6885-3p ; hsa-mir-6771-3p ; hsa-mir-1909-5p ; hsa-mir-4693-3p ; hsa-mir-551b-5p ; hsa-mir-4311 ; hsa-mir-548c-3p ; hsa-mir-4477a ; hsa-mir-508-5p ; hsa-mir-3145-5p ; hsa-mir-606 ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-4672 ; hsa-mir-466 ; hsa-mir-3941 ; hsa-mir-610 ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-5697 ; hsa-mir-101-5p ; hsa-mir-8062 ; hsa-mir-8079 ; hsa-mir-1245a

Nearest miRNA

hsa-mir-12113/Upstream/2223849; hsa-mir-1243/Downstream/3953862;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/22671, chr4-CpG: 68/Downstream/139584

Upstream sequence

TTATATTCGTTGATTTCTTATAATGTTTACAATTTGAAATTGGCATACAGGTTTTGTATTTTAGTTACTTAAATGTTTTTCATAGTGGTTATAGGTATTT

Downstream sequence

ACAGtgatatgctataaatgggttataggtgtaccaagatttgatttttcctttcaccccctcagagtagcctggttgtggttgaaggtccctgcctgcc

Target sequence

ATAATCAGCATGAAAATATTAGAAAGTGAAAGTGTATAAGAATTTGTGTTTTTAGCTTACATACAAATGGAGATCCTGCTGTGGATTCAAATGTGTGTATTTGTGTATGTAATTAGAGTTTTACATCCAAGTTTTATCTTAGTATGATTTGGCTTTTGTATCAAAAGTACGTAAGATGTTTGTAAGGCTGTGTCTAGACTTATCTCTGAGTATCAGAATAATCTGACTAAATCTTGCTTACTCATGTGCTATGGT