Basic Information
VIS ID
TVIS30016240
Fusion event
HIV-chr4 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q24
Reference genome
GRCh37/hg19
Start
104785620/103864463 (Hg38)
End
104785646/103864463 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2534049; hsa-mir-1243/Downstream/5624235;
Nearest TSS
ENST00000502981/Upstream/144647; ENST00000510505/Downstream/97153;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/144823, chr4-CpG: 88/Downstream/1281576
Nearby gene
TACR3(No orient, 144647)
Upstream sequence
agacttctgtcagatgcatagtttgcaaaattttctcccattctgtaggttgtctgtttactctgttgatagtttcttttgctgtataaaatatctttag
Downstream sequence
tgcttttgctgcaattgcttttggcatgtttgttatgaaatatttgtcatgcctatgttctgaatggtattgcctaggttgtcctctgggttttttatag
Target sequence
ttaactagatcccatttgtccatttt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate