VISDB Viral Integration Site DataBase

VIS ID

TVIS30016254

Fusion event

HIV-SLC10A7 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

q31.22

Reference genome

Start

End

147393395/146472061 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-196a-5p ; hsa-let-7d-5p ; hsa-mir-484 ; hsa-mir-106b-5p ; hsa-mir-218-5p ; hsa-mir-192-3p ; hsa-mir-4799-5p ; hsa-mir-5189-3p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-3935 ; hsa-mir-6846-5p ; hsa-mir-6848-5p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-4749-5p ; hsa-mir-4706 ; hsa-mir-4259 ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-577 ; hsa-mir-382-5p ; hsa-mir-495-5p ; hsa-let-7c-5p ; hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-let-7i-5p ; hsa-mir-98-5p ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-548v ; hsa-mir-187-5p ; hsa-mir-3121-5p ; hsa-mir-1306-5p ; hsa-mir-6507-3p ; hsa-mir-5089-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-132-3p ; hsa-mir-212-3p ; hsa-mir-3177-5p ; hsa-mir-4282 ; hsa-mir-4302 ; hsa-mir-6856-3p

Nearest miRNA

hsa-mir-12113/Upstream/63373; hsa-mir-1305/Downstream/872568;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/295651, chr4-CpG: 84/Downstream/49878

Upstream sequence

ATTTCCTGTTCTCCATACCCCCCCACTCCCAAAAGATAGCTCATGCAGTTTTCCAAATATACACTAAAAATAAAGAGAAATAAAAGTGACATCTCAATAC

Downstream sequence

AGAAAAACACTTCCATGTACGGCATACATACCAGTGTTAGGAAGAAAAACAAACCCAGAAATTAATTAAGAAATGGGTGGTTTTACAGAGTGCTATAAGA

Target sequence

AAAATATAAATCCTTCAGCATCTTAAAAATAAACTTTTCTATAAAATATAGTGGAATAACTGAGGGACAAACATTAAAGAATAATGAACGTGCAAAAAAAATGCACTGCTGTCAGCATTATACCTGGGTACAAATGTGTTAGAGCATCTTAGTTTAAAACAAATCAAGTTAAGCGCCTGTTT