VISDB Viral Integration Site DataBase

VIS ID

TVIS30016261

Fusion event

HIV-TMEM131L integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

q31.3

Reference genome

Start

End

154435481/153514081 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-744-5p ; hsa-mir-335-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-5007-3p ; hsa-mir-5092 ; hsa-mir-3163 ; hsa-mir-513b-3p ; hsa-mir-548n ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-606 ; hsa-mir-4684-5p ; hsa-mir-3675-3p ; hsa-mir-4724-5p ; hsa-mir-216b-5p ; hsa-mir-3150b-5p ; hsa-mir-3150a-5p

Nearest miRNA

hsa-mir-12113/Upstream/977565; hsa-mir-1305/Downstream/5614721;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/46618, chr4-CpG: 95/Downstream/169853

Upstream sequence

AGATAAGTCTCATTTTTTTTCTCTGTCTCATAATTGTGGATTTTAAGTGGATTCCTTTGAGTAGCTTTCTTTTGAGGTACCAGTTTCCCTCAGATACTGC

Downstream sequence

TTCTCTTGGATCTCAATTGCTTTTCACTTGGCATTTGTCTCGGCTGAGTAGAGAATTGCTTTTTAAATGATGAGAAATGAGTCAACAATGCATGGTGATG

Target sequence

ATagcacagctttggaatcataaaccttggtttgaattctggctcaccctcttgccctgggtgaccgtagccaattaatctttgcagctttgattttctcctctgtaaaacaagactaatggtaccttttctagaggattgttgagaaggcttagtggtgcagttcacataaagATCATTGTGTGAGGTCTACACAATGCACATGCTCTGTAGCAGGACCAGAGGCTATCGTGAATTATTGCCCATGT