Basic Information
VIS ID
TVIS30016267
Fusion event
HIV-chr5 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
39079216/39079114 (Hg38)
End
39079117/39079114 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5A
Nearest miRNA
hsa-mir-10397/Upstream/521553; hsa-mir-103a-1/Downstream/14872390;
Nearest TSS
ENST00000502646/Upstream/4706; ENST00000603514/Downstream/31528;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/3980, chr5-CpG: 39/Downstream/345676
Nearby gene
RICTOR(No orient, 4715)
Upstream sequence
tttaaaaagtcttatttatacaaaattatcacatgtggtactatctctgtacttctgtatgaactcctttttaaattgatgggaactgcttcatcgattt
Downstream sequence
tcataaaacattgttcttattaaggaagttgtttactgataaggacacctggtatttggtacttttactttgatggcacagaaaaaagcttaacagaatt
Target sequence
ttaaaaagtcttatttatacaaaattatcacatgtggtactatctctgtacttctgtatgaactcctttttaaattgatgggaactgcttcatcgattt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate