VISDB Viral Integration Site DataBase

VIS ID

TVIS30016271

Fusion event

HIV-FYB1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

p13.1

Reference genome

Start

End

39167313/39167009 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-4795-3p ; hsa-mir-613 ; hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-126-5p ; hsa-mir-4307 ; hsa-mir-656-3p ; hsa-mir-33a-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p

Nearest miRNA

hsa-mir-10397/Upstream/609448; hsa-mir-103a-1/Downstream/14784495;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/91875, chr5-CpG: 39/Downstream/257781

Upstream sequence

ggtatccatgaaaaaaaacccctgcactttatcccttaaatttatataaataaaaaaaGAAAGGAGGGACCCTGAGTCAAAATATAGCACATAAACATAA

Downstream sequence

gatgcggggatcaagcttctactagaggtgtgatcttgggtagttctctctctctctctgtctctctctctctctcCCTTGTTTTTGTTTTTGTTTTAAG

Target sequence

GATGATAAATCAGGTTTTAGAGGAGAGAAAGATATATAaagttggtgcaaaggtaattgcggtttttgccattacttttggtaaaagctgcaattaactttgcaccaacctaaAAGAAGAAAAGACACAGAAGGAAAAAAATATAAAAGCCAcaaagaagtagtggggcacagtggagagagcgagcgttttgaaatgagat