VISDB Viral Integration Site DataBase

VIS ID

TVIS30016284

Fusion event

HIV-IPO11 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q12.1

Reference genome

Start

End

61733004/62437345 (Hg38)

Orient

-

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-629-3p ; hsa-mir-3679-3p ; hsa-mir-4279 ; hsa-mir-6832-3p ; hsa-mir-3119 ; hsa-mir-6756-3p ; hsa-mir-3127-3p

Nearest miRNA

hsa-mir-10397/Upstream/2733642; hsa-mir-103a-1/Downstream/9732122;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/24116, chr5-CpG: 32/Downstream/1521872

Upstream sequence

TTCAAGTATGTTAACTTATCATTGCCAGGTTTCCATGGATCTCAATAGTGCCAGCACTGTTGTTCTTCAGGTGTTAACACAGGCCACCAGTCAGGATACT

Downstream sequence

GCTGTGTTAAAACCAGCTGAGGAGCAGTTGAAGCAGTGGGAGACACAGCCAGGTTTCTATTCAGTGTTGCTGGTAAGTTGTTCTAAAATTGTTTGCTTTT

Target sequence

ATTCAGAACATGAAAGCTTTTTGTCTCCATTTATTTTACTGTTAATTTTTTATTACTTGTAATACATATTCAAGTATGTTAACTTATCATTGCCAGGTTTCCATGGATCTCAATAGTGCCAGCACTGTTGTTCTTCAGGTGTTAACACAGGCCACCAGTCAGGATACT