Basic Information
VIS ID
TVIS30016286
Fusion event
HIV-chr5 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
68203411/68907584 (Hg38)
End
68203309/68907584 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/9203881; hsa-mir-103a-1/Downstream/3261883;
Nearest TSS
ENST00000502646/Upstream/374054; ENST00000513197/Downstream/54574;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/618961, chr5-CpG: 62/Downstream/186266
Nearby gene
SLC30A5(No orient, 186370)
Upstream sequence
aacagaattcatacctttaaaacttttaaccccagtctcaccaaagaacataaggtcttctctcatttcccttggtaaagtttacaatttttttcatatt
Downstream sequence
ggacctaaacatttcttgttaagattatcccaaagtatttcatatttttgtgctattgcaaatggaatAATCAGTCTCATTTTAGAAAATAATTTTTGGA
Target sequence
tgaacagaattcatacctttaaaacttttaaccccagtctcaccaaagaacataaggtcttctctcatttcccttggtaaagtttacaatttttttcatatt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate