VISDB Viral Integration Site DataBase

VIS ID

TVIS30016296

Fusion event

HIV-ARRDC3 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q14.3

Reference genome

Start

End

90674345/91378086 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-130b-3p ; hsa-mir-148a-3p ; hsa-mir-19b-3p ; hsa-let-7a-5p ; hsa-mir-130b-5p ; hsa-mir-4753-3p ; hsa-mir-19a-3p ; hsa-mir-182-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-877-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-3675-3p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-mir-10397/Upstream/1361366; hsa-mir-103a-1/Downstream/2242610;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/97274, chr5-CpG: 89/Downstream/1919

Upstream sequence

AGGTTTTAATATTTGTTAAAAGGCATTTTTTTTTAAAAAGTTTGTATCATCTCTTCCAACAATCTGTCATTACTTTAAGAATATACCACTTTCCTTTTTC

Downstream sequence

AAAAAATAGCTTCTTATGTTTAATATATTGTTTTCCTCTAGCAAGTTTCAGTAATGAAAAGGGTTTTTTTTTCAACTAAAAATGTTTAAATTTAGAATAC

Target sequence

CTTTCTTACTAGATTCCAAGTTTTATATTAATGTATCCTTGATGCATGTTTCCTTTTAAGCCTGGGTCATATCTCTTGTGTGACCTTCCCAATAGTTCTTTGTACAGAAGCTATTAAGTTCATATCAGAAGAAAAACATTTCTAAAGTTAGGATATTCCTAATTATTTTTATTTTCGAAACTTACTGCTATTGGTTAGTATTAGCAGAAAAAGTAGAATATAGAATTTTTTATAAATTGAAGCTACTAAGACTTG