VISDB Viral Integration Site DataBase

VIS ID

TVIS30016311

Fusion event

HIV-RAD50 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q31.1

Reference genome

Start

End

131928914/132593598 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-544a ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-6845-5p ; hsa-mir-6762-5p ; hsa-mir-4640-5p ; hsa-mir-4726-5p ; hsa-mir-766-5p ; hsa-mir-5093 ; hsa-mir-4261 ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-7113-5p ; hsa-mir-5584-5p ; hsa-mir-4496 ; hsa-mir-1252-3p ; hsa-mir-335-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6842-3p ; hsa-mir-647 ; hsa-mir-4753-3p ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-6762-3p ; hsa-mir-604 ; hsa-mir-3160-5p ; hsa-mir-130b-5p ; hsa-mir-1182 ; hsa-mir-1304-3p ; hsa-mir-4524b-3p ; hsa-mir-4639-3p ; hsa-mir-4727-5p ; hsa-mir-4769-3p ; hsa-mir-511-5p ; hsa-mir-6794-3p ; hsa-mir-6817-5p ; hsa-mir-6830-3p ; hsa-mir-7702

Nearest miRNA

hsa-mir-10397/Upstream/227999; hsa-mir-103a-1/Downstream/833998;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/36333, chr5-CpG: 77/Downstream/62264

Upstream sequence

AAGATTAAAATTTAAAAATTCTATTTTCATTTCTGTGAGTAATCCATTATAAAAAGTGATCATGTTTCTCAGATGTTACCTTGGATAGTGGTTGGATAAG

Downstream sequence

CGGGTCAAAAATTCCACAcagatttttgaggaaagtagaaggacttggctttggtggtgtttaatctgtgtttcttgtggaagtatctgtgagggaatac

Target sequence

atttgatacttgttcttgcttcagtttaattggggctcttttcaaactgatgtcttaaccttgttagtgccttaaactagatcctattcagacatgttataacaagttagtatgagtttgtttcagtgcaaaacattttgaacttcatgcatagttttttttataatacacattttccatgaacattttgaagacccctcATATTTTGCAAATTAAGTAAAATGGTAACGGATAGTAATTTAGGCCTCTTGTCCC