Basic Information
VIS ID
TVIS30016326
Fusion event
HIV-UBE2D2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.2
Reference genome
End
138977232/139597579 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10397/Upstream/1949930; hsa-mir-103a-1/Downstream/966092;
Upstream sequence
ATGGATCTTGTATTCTGCTTAGATAAATCTTAGCTCTTGAGTTAAAAACCTTGATGTTATTCAGCATGGAAAAAAGTAACTCAGTTTGAAAGGGGCAAAA
Downstream sequence
TTAAATTGTTAAATTCAAGTTATATTTTAATTAACAACCTGTTGCTATAGCAATGTCTTAAATAAAGCCAGGTGTTCTTAGTTATACCAACCTGTGCTGT
Target sequence
GATTAAAGCGAAATCAAAAGTAAAATTCCACTTAATGAACATGGCAGGACTTCAGAATTGTTCAATTG
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate