VISDB Viral Integration Site DataBase

VIS ID

TVIS30016339

Fusion event

HIV-FAF2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q35.2

Reference genome

Start

End

175888604/176461907 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-193b-3p ; hsa-mir-149-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p

Nearest miRNA

hsa-mir-10397/Upstream/93876; hsa-mir-1229/Downstream/167532;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/13480, chr5-CpG: 135/Downstream/74590

Upstream sequence

gtcccactttccaatttttgtttttgttgcaaatgtttttggggacttagtcataaattctttgccaagaccaatgtccagaatgatactactaggtttt

Downstream sequence

cttgtaggatttttatagttttaggtcttacatttaaTGATTAATATTTTTAAACTTTACAGGGGTGTTAGAAGTAAGCATCAGAAAAgctaggtgcagt

Target sequence

tggtatgagccactcggcctggcttttgccagtttttttttaatggggttattattattattatttgcttgttgaattgtttctcatatattctggatattaggcctttgtcagattcatagtttgcgaagattttctcccattttgtctgtttactctgttgatagtttcttttactgtgtagaagctcttcagtttaattaggtcccactttccaatttttgtttttgttgcaaatgtttttggggacttagt