VISDB Viral Integration Site DataBase

VIS ID

TVIS30016340

Fusion event

HIV-NSD1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q35.3

Reference genome

Start

End

176580220/177153378 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-423-5p ; hsa-mir-615-3p ; hsa-mir-186-5p ; hsa-mir-149-5p ; hsa-mir-23b-3p ; hsa-mir-374a-5p ; hsa-mir-1470 ; hsa-mir-3190-3p ; hsa-mir-1238-5p ; hsa-mir-3659 ; hsa-mir-4658 ; hsa-mir-4758-5p ; hsa-mir-6790-5p ; hsa-mir-3927-3p ; hsa-mir-6831-5p ; hsa-mir-6758-5p ; hsa-mir-6856-5p ; hsa-mir-218-5p ; hsa-mir-5581-3p ; hsa-mir-6832-5p ; hsa-mir-4451 ; hsa-mir-6077 ; hsa-mir-486-3p ; hsa-mir-7-5p ; hsa-mir-2115-5p ; hsa-mir-298 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-3184-5p ; hsa-mir-6743-5p ; hsa-mir-4688 ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7d-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-98-5p ; hsa-let-7g-5p ; hsa-let-7c-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-4469 ; hsa-mir-5695 ; hsa-mir-3667-3p ; hsa-mir-4667-3p ; hsa-mir-4286 ; hsa-mir-1224-3p ; hsa-mir-6809-5p ; hsa-mir-4708-3p ; hsa-mir-3922-5p ; hsa-mir-4717-5p ; hsa-mir-4753-5p ; hsa-mir-6513-5p ; hsa-mir-5089-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-4303 ; hsa-mir-513b-5p ; hsa-mir-3147 ; hsa-mir-4425 ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-4682 ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-6874-3p ; hsa-mir-148b-5p ; hsa-mir-3943 ; hsa-mir-892b ; hsa-mir-513b-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p

Nearest miRNA

hsa-mir-10397/Upstream/523878; hsa-mir-1229/Downstream/2644900;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/18727, chr5-CpG: 24/Downstream/112961

Nearest cancer related gene

NSD1(OG, No orient, 0)

Upstream sequence

ttgatgtacttatttctggatggctttccaaaaggattttaccattttacacacagttctaaatagtatatgaatttagcatttgtcccacacttagata

Downstream sequence

gcactgatttttttttttattaagtgggtgcaaaatgctactacaagattgctttaattactacagttttattgatGAAAATGATTTCTACTTGTTTACT

Target sequence

tttaattatttcttgaggattaactgctgatagtggaatatcatatatatagttggctcttgatgtacttatttctggatggctttccaaaaggattttaccattttacacacagttctaaatagtatatgaatttagcatttgtcccacacttagata