Basic Information
VIS ID
TVIS30016370
Fusion event
HIV-chr6 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.2
Reference genome
End
26126840/26126370 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-mir-3691/Upstream/7554490; hsa-mir-10398/Downstream/1021256;
Nearby gene
HIST1H2AC(No orient, 1680)
Upstream sequence
ACTTCCCAGATACTGACACCGGCTCAGGGCGGATCCAGCCTTTTCCGCTCTTCCCTCCCTCCACCCCCTCCTTTCCCTACAACTACTCTCAAAGGAAAAG
Downstream sequence
CTTATGGGCCTTGGAATCCTTTTTATTCACTGACCAAATTGCCTTTGATTCCAGCTCCCAATCGGTGTGTGACCTTGGCCTAGGGCTTAATCTCTTCCTA
Target sequence
GGTTGGATGTCCCATTTGGGTGAAAACAAAGTGGCATAAAAGCAAATGATCACCTTTGATAGCCACATATTAGAATTTTCCGAGGGTATTTTTAAATTACAACGATTCTAATGGGCAGCTGGGCTGAGAATCATCAGATTTGAAGGTCTGGTTTCACATGGCTCTTGGGCTGAGAAGACCGGATTTTCCCCCCCCAGCATTTCCTGTATGTCCGAGAATTTCGATCCTAAGGTTAGAATTGC
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate