VISDB Viral Integration Site DataBase

VIS ID

TVIS30016373

Fusion event

HIV-BTN3A1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p22.2

Reference genome

Start

End

26407892/26407903 (Hg38)

Orient

-

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-324-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p

Nearest miRNA

hsa-mir-3691/Upstream/7836023; hsa-mir-10398/Downstream/739723;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/122191, chr6-CpG: 18/Downstream/50179

Upstream sequence

TGTGGAAGCACCTGTGGTTGCAGACGGAGTGGGCCTGTATGCAGTAGCAGCATCTGTGATCATGAGAGGCAGCTCTGGGGAGGGTGTATCCTGTACCATC

Downstream sequence

AGAAGTTCCCTCCTCGGCCTGGAAAAGACAGCCAGCATTTCCATCGCAGGTCAGTACCTGCTTGGCCTCAGGTTTTCTGAGCTGGGCTGTGGCAGTTGAA

Target sequence

CCACAGCACTGGGTTCTGATCTTCACGTTGATGTGAAGGGTTACAAGGATGGAGGGATCCATCTGGAGTGCAGGTCCACTGGCTGGTACCCCCAACCCCAAATACAGTGGAGCAACAACAAGGGAGAGAACATCCCGACTGTGGAAGCACCTGTGGTTGCAGACGGAGTGGGCCTGTATGCAGTAGCAGCATCTGTGATCATGAGAGGCAGCTCTGGGGAGGGTGTATCCTGTACCATC