Basic Information
VIS ID
TVIS30016377
Fusion event
HIV-chr6 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
27796637/27828859 (Hg38)
End
27796753/27828859 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3143/Upstream/681171; hsa-mir-10398/Downstream/2755473;
Nearest TSS
ENST00000381078/Upstream/4751; ENST00000612898/Downstream/2668;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/4420, chr6-CpG: 47/Downstream/2353
Nearby gene
HIST1H4K(No orient, 2314)
Upstream sequence
aacctctgcctcctgggttttcgtgcctcagcctcccaagtagctgagattatatacgcaggccaccaggcccagctaatttttgagtatttttagtaga
Downstream sequence
AAACACATTTTTAAAGTTAAGACTTAAATGTTGTTTTATAATTTTACACCACCAAAGTGATGTGACACGGTGAAAAATTTAAAGCACAATCATAAGAAGC
Target sequence
gaaattgcctcaccatgttgtccaggctggtctcaaagtcctggccttaagcaatctgactgcctcatcctccccaagtgctaggattatgggcatgagccatcgcaccaggccAA
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate