VISDB Viral Integration Site DataBase

VIS ID

TVIS30016385

Fusion event

HIV-ABCF1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p21.33

Reference genome

Start

End

30542713/30575056 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-183-5p ; hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-23b-3p ; hsa-let-7b-5p ; hsa-mir-1273e ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-873-5p ; hsa-mir-6134 ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-302f ; hsa-mir-190a-3p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-5580-3p ; hsa-mir-5583-3p ; hsa-mir-4517 ; hsa-mir-1277-5p ; hsa-mir-5698 ; hsa-mir-1178-3p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-6722-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-3934-3p ; hsa-mir-6499-3p ; hsa-mir-4524a-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-6812-3p ; hsa-mir-5693 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-5007-5p ; hsa-mir-4797-5p ; hsa-mir-6771-5p ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-6746-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3612 ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-6086 ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-6807-5p ; hsa-mir-1193 ; hsa-mir-205-5p ; hsa-mir-216b-3p ; hsa-mir-3607-5p ; hsa-mir-370-5p ; hsa-mir-3974 ; hsa-mir-4761-5p ; hsa-mir-6516-3p

Nearest miRNA

hsa-mir-3143/Upstream/3427368; hsa-mir-10398/Downstream/9276;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/3346, chr6-CpG: 57/Downstream/42052

Upstream sequence

GAGAAGTAGATGCACCATAAAACTTTCCTGAATAAATGATTACTTTGAAATACATGGAATTCTAGTCTGAGAATATTTTAATGTAGTAGATGGCGGATAC

Downstream sequence

CATTGACtttttttcttttttttttttttttttgagacagtctcgctgtgtcacccaggctggagtgcagtggcgcgatcttggctcactgcaacctcca

Target sequence

TCGTTAACTCTAGTTTTTTGGAGAAGTAGATGCACCATAAAACTTTCCTGAATAAATGATTACTTTGAAATACATGGAATTCTAGTCTGAGAATATTTTAATGTAGTAGATGGCGGATAC