VISDB Viral Integration Site DataBase

VIS ID

TVIS30016400

Fusion event

HIV-VPS52 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p21.32

Reference genome

Start

End

33226334/33258307 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-4728-5p ; hsa-mir-607 ; hsa-mir-3591-5p ; hsa-mir-628-5p ; hsa-mir-3671 ; hsa-mir-6807-5p ; hsa-mir-124-5p ; hsa-mir-3175 ; hsa-mir-6731-5p ; hsa-mir-8085 ; hsa-mir-8077 ; hsa-mir-7160-5p ; hsa-mir-655-5p ; hsa-mir-4663 ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-4779 ; hsa-mir-4255 ; hsa-mir-7161-3p ; hsa-mir-302f ; hsa-mir-142-3p ; hsa-mir-513b-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-4252 ; hsa-mir-205-5p ; hsa-mir-4719 ; hsa-mir-7853-5p ; hsa-mir-105-5p ; hsa-mir-330-3p ; hsa-mir-7109-3p ; hsa-mir-6771-3p ; hsa-mir-3065-3p ; hsa-mir-338-3p ; hsa-mir-3617-3p ; hsa-mir-383-3p ; hsa-mir-500b-3p ; hsa-mir-6884-3p ; hsa-mir-7156-3p

Nearest miRNA

hsa-mir-1236/Upstream/50363; hsa-mir-10398/Downstream/28920;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/8621, chr6-CpG: 53/Downstream/13242

Upstream sequence

caaaacccatctctactaaatatacaaaaattagccgggcgtggtagcacacgcctgtaatcccagctactcaggaggctgagaaaggataagtgcttga

Downstream sequence

cttataaataaaaaatactagcagacttatttttttctttattttttgagagagtcacgctctgtaactgaggctggagtgcagtggcataatcttggct

Target sequence

acccgggaggcagaggtgcagtgagctgagatcacaccattgcactccagcctcggcaacatgagtgaaactccatctcaaaaaaaaaaaaaaaaaggtgcaaggatttcttgagcccaggagcctgggcaacacagaaagaccctcatctcaccaaaaaaaaaaaaaaaaGTAAAaagatacatactaaaagataatctgtaacctacgtataatcaacaagattagtatgtagatgatgcaaagaact