VISDB Viral Integration Site DataBase

VIS ID

TVIS30016403

Fusion event

HIV-NUDT3 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p21.31

Reference genome

Start

End

34304979/34337120 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-766-3p ; hsa-mir-16-5p ; hsa-mir-4753-3p ; hsa-mir-4768-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-3941 ; hsa-mir-221-5p ; hsa-mir-8073 ; hsa-mir-617 ; hsa-mir-6505-3p ; hsa-mir-136-5p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-31-5p ; hsa-mir-100-3p ; hsa-mir-526b-5p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-7703 ; hsa-mir-4325 ; hsa-mir-4699-5p ; hsa-mir-9500 ; hsa-mir-6873-5p ; hsa-mir-5096 ; hsa-mir-5587-5p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-197-3p ; hsa-mir-6832-5p ; hsa-mir-6801-5p ; hsa-mir-1273f ; hsa-mir-1279 ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-6890-5p ; hsa-mir-129-5p ; hsa-mir-4282 ; hsa-mir-8055 ; hsa-mir-500b-3p ; hsa-mir-1912 ; hsa-mir-1295b-5p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-5089-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-6832-3p ; hsa-mir-3938 ; hsa-mir-493-5p ; hsa-mir-6878-3p ; hsa-mir-7973 ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-7114-3p ; hsa-mir-1180-5p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6747-3p ; hsa-mir-1224-3p ; hsa-mir-6513-3p ; hsa-mir-1253 ; hsa-mir-6794-3p ; hsa-mir-4653-3p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-4639-3p ; hsa-mir-6514-5p ; hsa-mir-6734-3p ; hsa-mir-9-3p ; hsa-mir-4524a-3p ; hsa-mir-302a-5p ; hsa-mir-6758-3p ; hsa-mir-4797-5p ; hsa-mir-4422 ; hsa-mir-4312 ; hsa-mir-6778-3p ; hsa-mir-150-5p ; hsa-mir-212-5p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-4291 ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-1179 ; hsa-mir-6835-3p ; hsa-mir-548e-5p ; hsa-mir-1233-5p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-338-5p ; hsa-mir-4456 ; hsa-mir-4786-5p ; hsa-mir-5007-3p ; hsa-mir-541-3p ; hsa-mir-633 ; hsa-mir-654-5p ; hsa-mir-6731-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6778-5p ; hsa-mir-6788-5p ; hsa-mir-6871-5p ; hsa-mir-6878-5p ; hsa-mir-7705 ; hsa-mir-8085 ; hsa-mir-92a-2-5p ; hsa-mir-122-5p ; hsa-mir-1267 ; hsa-mir-143-5p ; hsa-mir-192-5p ; hsa-mir-200c-5p ; hsa-mir-215-5p ; hsa-mir-3135b ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-3616-3p ; hsa-mir-3622b-5p ; hsa-mir-3652 ; hsa-mir-3664-5p ; hsa-mir-367-5p ; hsa-mir-4423-5p ; hsa-mir-4430 ; hsa-mir-4436b-3p ; hsa-mir-449a ; hsa-mir-449b-5p ; hsa-mir-4632-5p ; hsa-mir-4714-5p ; hsa-mir-504-3p ; hsa-mir-514a-5p ; hsa-mir-5190 ; hsa-mir-550a-3p ; hsa-mir-550b-3p ; hsa-mir-5693 ; hsa-mir-5698 ; hsa-mir-6499-3p ; hsa-mir-6501-5p ; hsa-mir-6728-3p ; hsa-mir-6735-5p ; hsa-mir-6805-3p ; hsa-mir-6828-3p ; hsa-mir-6879-5p ; hsa-mir-7106-3p ; hsa-mir-744-3p ; hsa-mir-767-3p ; hsa-mir-7843-5p

Nearest miRNA

hsa-mir-1236/Upstream/96384; hsa-mir-10398/Downstream/1133388;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/87549, chr6-CpG: 134/Downstream/54723

Upstream sequence

GTCTAATTCTCTGTTGATAAAACTGGAAAATCCACTTCTTTCATTCTGTTTTGATGGAAGCCACTGAACTGTTTCTGTAATGACATGTTCTCTTATTTTT

Downstream sequence

GAATAAAATATGAGATATGATGATATGATTCTCCTCTGACTGCAGAAAAAAAATTAGCTCAAAGTCAGGAAGGATTCTTTAAGGCTGAGAACGGCAGGCA

Target sequence

ATTGTTTGTACATTTTATTTGGATACTTATTCTAAAGTTCAAAGCAGTTCACAGACATTTCTTTATCCTCTCAATAATGCTG