VISDB Viral Integration Site DataBase

VIS ID

TVIS30016422

Fusion event

HIV-chr6 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p21.1

Reference genome

Start

End

42756102/42788523 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

BICRAL ; LOC401261

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-192-5p ; hsa-mir-4526 ; hsa-mir-4504 ; hsa-mir-6721-5p ; hsa-mir-5191 ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-7854-3p ; hsa-mir-135a-3p ; hsa-mir-7843-5p ; hsa-mir-6879-5p ; hsa-mir-6735-5p ; hsa-mir-4632-5p ; hsa-mir-4436b-3p ; hsa-mir-9500 ; hsa-mir-6750-5p ; hsa-mir-6822-5p ; hsa-mir-5584-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-4311 ; hsa-mir-200a-3p ; hsa-mir-141-3p

Nearest miRNA

hsa-mir-10398/Upstream/1054913; hsa-mir-10524/Downstream/646019;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/4829, chr6-CpG: 64/Downstream/101908

Upstream sequence

gttagccaggctggtctcgaactcctgacctcaggtgatccacgcacctaggcctcccaaaatgttgggattataggtgtgagccaccatgcctggccgg

Downstream sequence

gagcagcattcttaaggaattcaagacacaggaagaacacttgcctttagtgggagcaagacaacgcagtgtggcagaagacaaagaatgggggcacaag

Target sequence

caggtatgcaccaccacacccagctaattttgtatttttagtagagacgggtccaccatgttagccaggctggtctcgaactcctgacctcaggtgatccacgcacctaggcctcccaaaatgttgggattataggtgtgagccaccatgcctggccgg