VISDB Viral Integration Site DataBase

VIS ID

TVIS30016426

Fusion event

HIV-ICK integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

p12.1

Reference genome

Start

End

52877816/53013290 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-101-3p ; hsa-mir-4760-3p ; hsa-mir-3942-3p ; hsa-mir-449c-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-766-5p ; hsa-mir-6077 ; hsa-mir-8086 ; hsa-mir-6770-5p ; hsa-mir-3179 ; hsa-mir-4310 ; hsa-mir-7157-5p ; hsa-mir-4756-3p ; hsa-mir-3919 ; hsa-mir-205-3p ; hsa-mir-3154 ; hsa-mir-943 ; hsa-mir-4439 ; hsa-mir-3136-5p ; hsa-mir-6516-3p ; hsa-mir-3152-3p ; hsa-mir-205-5p ; hsa-mir-892a ; hsa-mir-6715b-3p ; hsa-mir-6715a-3p ; hsa-mir-548c-3p

Nearest miRNA

hsa-mir-10398/Upstream/864249; hsa-mir-10524/Downstream/263703;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/18321, chr6-CpG: 67/Downstream/48190

Upstream sequence

attactgacctttacagagttgtaactaggtgccaggtattattctaaattcttttcaagtattaactcattagtcctcaaagcaattgtatcaggtaag

Downstream sequence

tactattattatccttattttacagatgaggaaaatgaggagcagagaagccagataacttgcataggtatcaagctactaaacagcagagctgagattt

Target sequence

AGTAATGTGGataacaatctacaaatattaacacagcgctttatgcttttcaaaatatcttaaaaacatcatggcctttgatcctcatgaacaaccctgtctggtaggtaagacatgcactataatcttcctttgataaatgaggaaactgaatccatagggattaataacaattactgacctttacagagttgtaactaggtgccaggtattattctaaattcttttcaagtattaactcattagtcctcaaag