VISDB Viral Integration Site DataBase

VIS ID

TVIS30016468

Fusion event

HIV-HBS1L integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q23.3

Reference genome

Start

End

135366186/135044831 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-32-5p ; hsa-mir-130b-5p ; hsa-mir-125b-5p ; hsa-mir-218-5p ; hsa-mir-129-5p ; hsa-mir-507 ; hsa-mir-557 ; hsa-mir-10a-3p ; hsa-mir-26a-2-3p ; hsa-mir-526b-5p ; hsa-mir-6885-3p ; hsa-mir-3680-3p ; hsa-mir-450b-5p ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-3140-3p ; hsa-mir-6844 ; hsa-mir-4748 ; hsa-mir-5572 ; hsa-mir-4260 ; hsa-mir-450a-2-3p ; hsa-mir-5587-5p ; hsa-mir-6857-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-6810-5p ; hsa-mir-2110 ; hsa-mir-197-3p ; hsa-mir-6740-5p ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-7845-5p ; hsa-mir-5003-3p ; hsa-mir-190a-5p ; hsa-mir-190b

Nearest miRNA

hsa-mir-10398/Upstream/65399; hsa-mir-1202/Downstream/194329;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/726948, chr6-CpG: 35/Downstream/9780

Upstream sequence

TTCAGTTTCGTCTAAAAGTAACAAACATCCTTCCCCCAACTTCTCCTCCTACCCATGAACTAGGAGGGAGAAACCTAAGACAAATTAAAAAACTAAGTGA

Downstream sequence

TTTGCAAAGGGTGGGTGGGGGGAAGAGTAAGAAAACTCCCCCAGGAGAAGTAttgggtcgctgcaaaagtaaccgcaggtctttccattactttcaaagg

Target sequence

GGCATGAAATCAGATGTTTCCCTCAACAAGTTTCAGTCAGGAAATACTGACAGGGAAGAGGAAGTTTTCAATGCACAGGCTTCTCCTCTGCCTGCCAGGAGCTATTTTTTCTGTGGTGGGGTCGAGGGTGGTCCTATACGACCACACACACCCAACACATAACTCCAACTCAAAAACCCATACTGTGGCCACTATTTTGGAAGTAGTAATGGTTGGA