VISDB Viral Integration Site DataBase

VIS ID

TVIS30016470

Fusion event

HIV-MAP3K5 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q23.3

Reference genome

Start

End

137069965/136748664 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-769-3p ; hsa-mir-20a-5p ; hsa-mir-218-5p ; hsa-mir-1303 ; hsa-mir-5191 ; hsa-mir-4753-3p ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-130b-5p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-4517 ; hsa-mir-425-5p ; hsa-mir-301a-3p ; hsa-mir-19a-3p ; hsa-mir-1224-3p ; hsa-mir-4775 ; hsa-mir-590-3p

Nearest miRNA

hsa-mir-10398/Upstream/1509408; hsa-mir-1202/Downstream/1686549;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/197657, chr6-CpG: 172/Downstream/42874

Upstream sequence

AGACACAGGGCAAATAAAACCTGAGAAAATATACAAAAGACTATAAGATTAGTTTCTTGAAGAATAAAGATGCAATTAAATTACAGAATTTAACACCTGG

Downstream sequence

GCTTTAACTAGATTAACACTGACTAAGGCTCTTGGATAACTGCATAGGCAATTCATTTTGTATAATTAAGGAGAAGAAAATCAGCCAGTGGCTGTTGTTT

Target sequence

CATGGTACAATAAGATACCTTAGAAATAAAGAATTAAAACTTGAAGGCAAGTTTTTAGAAGTTAAAAGTTGAAGTACATGTTTTGTAGAAATTGTGGTCAAAGGTAAGAGAATAACTTCTAAGAAATGAGTGTAAAATATTGTAAAACAGCTTTAACTAGGTA