VISDB Viral Integration Site DataBase

VIS ID

TVIS30016473

Fusion event

HIV-PPIL4 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q25.1

Reference genome

Start

End

149847920/149526650 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-877-5p ; hsa-mir-320a ; hsa-let-7a-3p ; hsa-let-7b-3p ; hsa-let-7f-1-3p ; hsa-mir-98-3p ; hsa-mir-3591-5p ; hsa-mir-142-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-95-5p ; hsa-mir-4666a-3p ; hsa-mir-3163 ; hsa-mir-4280 ; hsa-mir-548l ; hsa-mir-4282 ; hsa-mir-548n ; hsa-mir-300 ; hsa-mir-381-3p ; hsa-mir-489-3p ; hsa-mir-3148 ; hsa-mir-3913-3p ; hsa-mir-3662 ; hsa-mir-548e-5p ; hsa-mir-891a-5p ; hsa-mir-508-5p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-566 ; hsa-mir-6789-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-6499-3p ; hsa-mir-2467-3p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-17-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6840-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-4459 ; hsa-mir-652-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4695-5p ; hsa-mir-1227-3p ; hsa-mir-1247-3p ; hsa-mir-1262 ; hsa-mir-4327 ; hsa-mir-455-3p ; hsa-mir-4649-3p ; hsa-mir-4701-3p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-542-3p ; hsa-mir-6516-5p ; hsa-mir-6736-5p ; hsa-mir-6742-3p ; hsa-mir-6776-5p ; hsa-mir-6807-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-10398/Upstream/8842767; hsa-mir-1202/Downstream/1576025;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/69597, chr6-CpG: 64/Downstream/19245

Upstream sequence

ATTCGCCTAGAATTCACAGAATCATCAAAATATGTCATTAGAAAACCACCAACTGATACCTAGTTTTTCTAAATATCTCTTTCACTAATTCTAAGGATTA

Downstream sequence

CAAACAAACAAAAACATAAATCAATTCCTATTTAGTTTCCATTCTAAATCCTATCCAATCCCACAATGCTGATTTCCTTAAAACATCTAAATTTATGTTA

Target sequence

CCTTCTTATTGGCCCAAATCTAGAGAATATTATTTCCAGATCCTCATCTGTGGTCACTGGGTTCAATTTACACACAAACAGTACATTTTCTGGAGGTTTAATATCTGCATCAGGTAGGTCTCCCACCTAAATTA