VISDB Viral Integration Site DataBase

VIS ID

TVIS30016476

Fusion event

HIV-TIAM2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr6

Cytoband

q25.2

Reference genome

Start

End

155486948/155166126 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-106a-3p ; hsa-mir-129-5p ; hsa-mir-3680-3p ; hsa-mir-3692-3p ; hsa-mir-4436b-5p ; hsa-mir-450b-5p ; hsa-mir-507 ; hsa-mir-557 ; hsa-mir-6509-3p

Nearest miRNA

hsa-mir-10398/Upstream/312690; hsa-mir-1202/Downstream/780671;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/170063, chr6-CpG: 16/Downstream/52715

Upstream sequence

TGGAAAATTAATAATCAGAGGAGTGGCAGCTCAGTTCTGTTGATAGAGCTGTGGATTTTGctcactaaatccttagaacatggccttggggttttgtcat

Downstream sequence

cccattttagagacgagcagactgacacttgaagaggttacgtcacttaccttatcctgttcaccagcaccaaagggcagggccaggactagtttctgcc

Target sequence

TTCAAAGGAATCAACTCTTAGCATGCACTTTTTTTTTTAACCCAACGAAACTGCACAAGTTGCCGTATCTATCCCGGCACCCCTGAAGAGGTAGTCACACTGCGTGCAGTGCTTAAGAACAGAAAAAATAAGAATAATCAGAAAATAATCCACACTTTTCCTTCCCTCTAGTACTAATATTTACTTTCTCATAGATTTTATATTAAAATAAATGGAAAATTAATAATCAGAGGAGTGGCAGCTCAGTTCTGTTGA