Basic Information
VIS ID
TVIS30016478
Fusion event
HIV-LOC105378102 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q26
Reference genome
GRCh37/hg19
Start
164435296/164014264 (Hg38)
End
164435319/164014264 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6E
Target gene
LOC105378102
Nearest miRNA
hsa-mir-10398/Upstream/5249511; hsa-mir-1913/Downstream/2495090;
Nearest TSS
ENST00000381078/Upstream/310360; ENST00000456118/Downstream/71397;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/41472, chr6-CpG: 28/Downstream/322748
Nearby gene
QKI(No orient, 435668)
Upstream sequence
gagtagtataatcctccaacaacagtgaggtctgacagggttgccaaacctgtattttgccaacaaggacattataaactaaaccaagaagatacgacta
Downstream sequence
tttcataagacatttaacatttcacatgaaaaaagagggaagaaagttaaatttggaaaaataagacaatgcttatgactatatttagctttatagaaaa
Target sequence
ttacctcatatatatcattagaa
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate