Basic Information
VIS ID
TVIS30016479
Fusion event
HIV-chr6 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37/hg19
Start
165681829/165268340 (Hg38)
End
165681860/165268340 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/6503587; hsa-mir-1913/Downstream/1241014;
Nearest TSS
ENST00000381078/Upstream/440590; ENST00000435810/Downstream/13682;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/930993, chr6-CpG: 31/Downstream/65934
Nearby gene
C6orf118(No orient, 11323)
Upstream sequence
TGCTGGGAAGGATGAGGTCAACACAGCCAGCTTAgtacattagaataactagggaaacttggccagccatggtggctcacacctgtaatcccagcacttt
Downstream sequence
caggagtttgagaccagcctggccaacatggtgaaaccccatctccattaaaaaatataaaaaaatgagccagacatggtggggtacacctttggtcgca
Target sequence
gggatgccgaggcaggcagatcacccgaggt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate